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Budde Lab

Dr. Matthew Budde

The mission of our collaborative research group is to improve care and outcomes for patients with injury and diseases affecting the spinal cord. Our contribution to this goal has focused on developing and employing magnetic resonance imaging (MRI) as a tool to understand spinal cord biology and pathology. MRI is routinely used in the clinical setting for diagnosis and prognosis, and we have used its translational value to bridge the gap between preclinical animal studies and human clinical research.

We have principally focused on two techniques: diffusion and perfusion MRI. Diffusion MRI can be used to detect microscopic damage that is often invisible or difficult to interpret using conventional MRI scans. Using a variety of other experimental methods such as animal studies, histology, and computational simulations helped us develop new diffusion MRI methods to very clearly reveal microscopic damage to the spinal cord. We have recently translated these advances to studies of acute SCI trauma patients. A complementary technique, perfusion MRI, is able to measure blood flow in the spinal cord. Although cord perfusion is believed to be critical to recovery, the technologies available to detect and measure spinal cord perfusion have not been reliable and, therefore, it has not been used routinely. We developed perfusion MRI in preclinical experiments to clearly detect the extent of blood flow deficits and are also actively working to translate the same technology to patients. Collectively, we believe our research will contribute to the discovery of better treatment options available to patients and are grateful to our sources of funding: National Institutes of Health, Department of Veteran’s Affairs, Craig H. Neilsen Foundation, Department of Defense, and Ϲ Center for Imaging Research.

Ongoing Studies

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Noninvasive Spinal Cord Perfusion Techniques with MRI
This project seeks to develop techniques to monitor perfusion of the spinal cord noninvasively with MRI. Blood flow and perfusion of the injured spinal cord is believed to be an important feature for diagnosis and management of the acutely injured cord, but the ability to detect in patients is limited. This study will first develop and optimize MRI methods for spinal cord perfusion in a preclinical model and relate the detected features with axonal injury and neurologic outcomes. The overarching goal is to improve the care and outcomes in patients with SCI.
Funding: National Institutes of Health
 
Monitoring Early Acute Therapeutic Responses with MRI in Preclinical Spinal Cord Injury
The goal of this study and its value to spinal cord injury research is to establish a rigorous and clinically-relevant translational paradigm with integrated biomarkers into preclinical therapy testing.  We will examine whether acute MRI markers of injury, including diffusion and perfusion MRI, are capable of detecting the effects of proven pharmacologic and surgical therapies in a preclinical model.  The overarching goal is to provide clinical management teams and clinical trials with markers to gauge the efficacy of interventions.
Funding: Department of Defense
Advanced MRI of the Injured Human Spinal Cord
This project will utilize advanced MRI markers of spinal cord damage in patients with acute human spinal cord injury with the goal of predicting neurological outcome. SCI is a heterogeneous injury and our prior work in preclinical models demonstrated a specialized type of diffusion MRI that has high sensitivity to axonal injury, the pathological features most associated with neurological dysfunction. The goal of this project is to identify improved diagnostic imaging markers of spinal cord injury and outcomes to improve patient care and refine clinical trials.
Funding: Craig H. Neilsen Foundation and the Department of Veteran’s Affairs.

Recent Publications

  • (Zhou M, Stobbe R, Budde M, Buck B, Kate M, Lloret M, Fairall P, Butcher K, Shuaib A, Emery D, Feiweier T, Beaulieu C.) Magn Reson Med. 2025 Nov;94(5):2158-2172 PMID: 40554725 PMCID: PMC12393189 SCOPUS ID: 2-s2.0-105009276833 06/24/2025

  • (Vedantam A, Rahman M, Salam S, Banerjee A, Satkunendrarajah K, Budde MD, Meier TB.) J Neurosurg Spine. 2025 Jun 01;42(6):718-726 PMID: 40215624 PMCID: PMC12624368 SCOPUS ID: 2-s2.0-105007067019 04/12/2025

  • (Schilling KG, Grussu F, Ianus A, Hansen B, Howard AFD, Barrett RLC, Aggarwal M, Michielse S, Nasrallah F, Syeda W, Wang N, Veraart J, Roebroeck A, Bagdasarian AF, Eichner C, Sepehrband F, Zimmermann J, Soustelle L, Bowman C, Tendler BC, Hertanu A, Jeurissen B, Verhoye M, Frydman L, van de Looij Y, Hike D, Dunn JF, Miller K, Landman BA, Shemesh N, Anderson A, McKinnon E, Farquharson S, Dell'Acqua F, Pierpaoli C, Drobnjak I, Leemans A, Harkins KD, Descoteaux M, Xu D, Huang H, Santin MD, Grant SC, Obenaus A, Kim GS, Wu D, Le Bihan D, Blackband SJ, Ciobanu L, Fieremans E, Bai R, Leergaard TB, Zhang J, Dyrby TB, Johnson GA, Cohen-Adad J, Budde MD, Jelescu IO.) Magn Reson Med. 2025 Jun;93(6):2535-2560 PMID: 40035293 PMCID: PMC11971501 SCOPUS ID: 2-s2.0-105001807462 03/04/2025

  • (Schilling KG, Howard AFD, Grussu F, Ianus A, Hansen B, Barrett RLC, Aggarwal M, Michielse S, Nasrallah F, Syeda W, Wang N, Veraart J, Roebroeck A, Bagdasarian AF, Eichner C, Sepehrband F, Zimmermann J, Soustelle L, Bowman C, Tendler BC, Hertanu A, Jeurissen B, Verhoye M, Frydman L, van de Looij Y, Hike D, Dunn JF, Miller K, Landman BA, Shemesh N, Anderson A, McKinnon E, Farquharson S, Dell'Acqua F, Pierpaoli C, Drobnjak I, Leemans A, Harkins KD, Descoteaux M, Xu D, Huang H, Santin MD, Grant SC, Obenaus A, Kim GS, Wu D, Le Bihan D, Blackband SJ, Ciobanu L, Fieremans E, Bai R, Leergaard TB, Zhang J, Dyrby TB, Johnson GA, Cohen-Adad J, Budde MD, Jelescu IO.) Magn Reson Med. 2025 Jun;93(6):2561-2582 PMID: 40008460 PMCID: PMC11971500 SCOPUS ID: 2-s2.0-85219588052 02/26/2025

  • (Jelescu IO, Grussu F, Ianus A, Hansen B, Barrett RLC, Aggarwal M, Michielse S, Nasrallah F, Syeda W, Wang N, Veraart J, Roebroeck A, Bagdasarian AF, Eichner C, Sepehrband F, Zimmermann J, Soustelle L, Bowman C, Tendler BC, Hertanu A, Jeurissen B, Verhoye M, Frydman L, van de Looij Y, Hike D, Dunn JF, Miller K, Landman BA, Shemesh N, Anderson A, McKinnon E, Farquharson S, Dell'Acqua F, Pierpaoli C, Drobnjak I, Leemans A, Harkins KD, Descoteaux M, Xu D, Huang H, Santin MD, Grant SC, Obenaus A, Kim GS, Wu D, Le Bihan D, Blackband SJ, Ciobanu L, Fieremans E, Bai R, Leergaard TB, Zhang J, Dyrby TB, Johnson GA, Cohen-Adad J, Budde MD, Schilling KG.) Magn Reson Med. 2025 Jun;93(6):2507-2534 PMID: 40008568 PMCID: PMC11971505 SCOPUS ID: 2-s2.0-105002179184 02/26/2025

  • (Santini T, Shim A, Liou JJ, Rahman N, Varela-Mattatall G, Budde MD, Inoue W, Everling S, Baron CA.) Magn Reson Med. 2025 Feb;93(2):788-802 PMID: 39323069 PMCID: PMC11604852 SCOPUS ID: 2-s2.0-85205058687 09/26/2024

  • (Labounek R, Bondy MT, Paulson AL, Bédard S, Abramovic M, Alonso-Ortiz E, Atcheson NT, Barlow LR, Barry RL, Barth M, Battiston M, Büchel C, Budde MD, Callot V, Combes A, De Leener B, Descoteaux M, de Sousa PL, Dostál M, Doyon J, Dvorak AV, Eippert F, Epperson KR, Epperson KS, Freund P, Finsterbusch J, Foias A, Fratini M, Fukunaga I, Wheeler-Kingshott CAMG, Germani G, Gilbert G, Giove F, Grussu F, Hagiwara A, Henry PG, Horák T, Hori M, Joers JM, Kamiya K, Karbasforoushan H, Keřkovský M, Khatibi A, Kim JW, Kinany N, Kitzler H, Kolind S, Kong Y, Kudlička P, Kuntke P, Kurniawan ND, Kusmia S, Laganà MM, Laule C, Law CSW, Leutritz T, Liu Y, Llufriu S, Mackey S, Martin AR, Martinez-Heras E, Mattera L, O'Grady KP, Papinutto N, Papp D, Pareto D, Parrish TB, Pichiecchio A, Prados F, Rovira À, Ruitenberg MJ, Samson RS, Savini G, Seif M, Seifert AC, Smith AK, Smith SA, Smith ZA, Solana E, Suzuki Y, Tackley GW, Tinnermann A, Valošek J, Van De Ville D, Yiannakas MC, Weber Ii KA, Weiskopf N, Wise RG, Wyss PO, Xu J, Cohen-Adad J, Lenglet C, Nestrašil I.) Imaging Neurosci (Camb). 2025;3 PMID: 40800833 PMCID: PMC12319740 08/13/2025

  • (Lasič S, Just N, Nilsson M, Szczepankiewicz F, Budde M, Lundell H.) Imaging Neurosci (Camb). 2025;3 PMID: 40800797 PMCID: PMC12319979 08/13/2025

  • (David G, Motovylyak A, Schlegel F, Kovacs Z, Kündig C, Filous AR, Schwab JM, Budde MD, Klohs J, Freund P.) Neurotrauma Rep. 2025;6(1):443-464 PMID: 40677997 PMCID: PMC12270540 07/18/2025

  • (Everson CA, Szabo A, Plyer C, Hammeke TA, Stemper BD, Budde MD.) Exp Neurol. 2024 Nov;381:114928 PMID: 39168169 SCOPUS ID: 2-s2.0-85201764724 08/22/2024

  • (Labounek R, Bondy MT, Paulson AL, Bédard S, Abramovic M, Alonso-Ortiz E, Atcheson NT, Barlow LR, Barry RL, Barth M, Battiston M, Büchel C, Budde MD, Callot V, Combes A, De Leener B, Descoteaux M, de Sousa PL, Dostál M, Doyon J, Dvorak AV, Eippert F, Epperson KR, Epperson KS, Freund P, Finsterbusch J, Foias A, Fratini M, Fukunaga I, Gandini Wheeler-Kingshott CAM, Germani G, Gilbert G, Giove F, Grussu F, Hagiwara A, Henry PG, Horák T, Hori M, Joers JM, Kamiya K, Karbasforoushan H, Keřkovský M, Khatibi A, Kim JW, Kinany N, Kitzler H, Kolind S, Kong Y, Kudlička P, Kuntke P, Kurniawan ND, Kusmia S, Laganà MM, Laule C, Law CSW, Leutritz T, Liu Y, Llufriu S, Mackey S, Martin AR, Martinez-Heras E, Mattera L, O'Grady KP, Papinutto N, Papp D, Pareto D, Parrish TB, Pichiecchio A, Prados F, Rovira À, Ruitenberg MJ, Samson RS, Savini G, Seif M, Seifert AC, Smith AK, Smith SA, Smith ZA, Solana E, Suzuki Y, Tackley GW, Tinnermann A, Valošek J, Van De Ville D, Yiannakas MC, Weber KA 2nd, Weiskopf N, Wise RG, Wyss PO, Xu J, Cohen-Adad J, Lenglet C, Nestrašil I.) bioRxiv. 2024 May 01 PMID: 38746371 PMCID: PMC11092490 05/15/2024

  • (Zhou M, Stobbe R, Szczepankiewicz F, Budde M, Buck B, Kate M, Lloret M, Fairall P, Butcher K, Shuaib A, Emery D, Nilsson M, Westin CF, Beaulieu C.) Magnetic Resonance in Medicine. May 2024;91(5):2126-2141 SCOPUS ID: 2-s2.0-85181197209 05/01/2024